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Am J Physiol Lung Cell Mol Physiol 296: L418-L429, 2009. First published December 31, 2008; doi:10.1152/ajplung.90382.2008
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Early response of gene clusters is associated with mouse lung resistance or sensitivity to cigarette smoke

Eleonora Cavarra,1,* Paolo Fardin,2,* Silvia Fineschi,1 Annamaria Ricciardi,2 Giovanna De Cunto,1 Fabio Sallustio,2 Michele Zorzetto,3 Maurizio Luisetti,3 Ulrich Pfeffer,4 Giuseppe Lungarella,1 and Luigi Varesio2

1Dipartimento di Fisiopatologia, Medicina Sperimentale e Sanità Pubblica, Università di Siena, Siena; 2Laboratorio di Biologia Molecolare, Istituto G. Gaslini Genova, Genova; 3Clinica di Malattie dell'Apparato Respiratorio, Fondazione IRCCS Policlinico S. Matteo, Università di Pavia, Pavia; and 4Istituto Nazionale per la Ricerca sul Cancro di Genova, S. S. Genomica Funzionale, Genova, Italy

Submitted 15 July 2008 ; accepted in final form 24 December 2008

We have investigated the effects of cigarette smoke exposure in three different strains of mice. DBA/2 and C57BL/6J are susceptible to smoke and develop different lung changes in response to chronic exposure, whereas ICR mice are resistant to smoke and do not develop emphysema. The present study was carried out to determine early changes in the gene expression profile of mice exposed to cigarette smoke with either a susceptible or resistant phenotype. The three strains of mice were exposed to smoke from three cigarettes per day, 5 days/wk, for 4 wk. Microarray analysis was carried out on total RNA extracted from the lung using the Affymetrix platform. Cigarette smoke modulates several clusters of genes (i.e., proemphysematous, acute phase response, and cell adhesion) in smoke-sensitive DBA/2 or C57BL/6J strains, but the same genes are not altered by smoke in ICR resistant mice. Only a few genes were commonly modulated by smoke in the three strains of mice. This pattern of gene expression suggests that the response to smoke is strain-dependent and may involve different molecular signaling pathways. Real-time quantitative PCR was used to verify the pattern of modulation of selected genes and their potential biological relevance. We conclude that gene expression response to smoke is highly dependent on the mouse genetic background. We speculate that the definition of gene clusters associated, to various degrees, with mouse susceptibility or resistance to smoke may be instrumental in defining the molecular basis of the individual response to smoke-induced lung injury in humans.

emphysema; antioxidant defenses; cigarette smoke susceptibility; mouse strains; microarrays



Address for reprint requests and other correspondence: G. Lungarella, Dipartimento di Fisiopatologia, Medicina Sperimentale e Sanità Pubblica, Università di Siena, Siena, 53100 Italy (e-mail: lungarella{at}unisi.it)







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