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1Klinik für Anästhesiologie und Intensivmedizin, Universitätsklinikum Essen, and 2Institut für Physiologische Chemie II, Universität Duisburg-Essen, Essen, Germany
Submitted 13 April 2006 ; accepted in final form 1 January 2007
| ABSTRACT |
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-subunits detected proteasomal proteins in the typical 20- to 30-kDa range in BAL supernatant. Incubation of BAL supernatant with I125-albumin showed a high mean cleavage rate (101.8 µg/ml x h lavage ± 46 SD) that was inhibited by epoxomicin (P = 0.013) and was ATP and ubiquitin independent. We identified for the first time extracellular, biologically active, ATP- and ubiquitin-independent 20S proteasome in the human alveolar space, with a high albumin cleavage rate. Possibly, the proteasome assists in maintenance of a low intra-alveolar oncotic pressure and/or alveolar protein degradation. albumin; bronchoalveolar lavage; circulating proteasome; fluorogenic peptides; alveolar protein degradation; lung proteins
-subunits (outer rings) and seven
-subunits (inner rings) (36), respectively. Its catalytic sites are exclusively associated with the
-subunits (40, 56) and are ATP and ubiquitin independent. The caspase-like activity of the
1-subunit cleaves after acidic residues, the trypsin-like activity of the
2-subunit cleaves after basic residues, and the chymotrypsin-like activity of the
5-subunit cleaves after hydrophobic residues. Together, these three enzyme activities allow the proteasome to cleave many different substrates into diverse products. Within the cell, the 20S proteasome is associated with large ATP- and ubiquitin-dependent 19S regulatory cap-like complexes, together yielding a 26S complex. It is now well accepted that proteasomes are localized in both cell cytoplasm and nucleus (4, 50). Whether proteasomes exist in the extracellular space under physiological conditions, however, has not been assessed. Vaithilingam et al. (61) described an extracellular proteasome-like structure with a molecular mass of 1,000 kDa released from cultured C6 astrocytoma cells that was able to degrade proteasomal fluorogenic substrates. This suggests that cells may secrete biologically active proteasome-like structures. However, investigations in vivo are missing, in particular, with regard to internal body surfaces.
Accordingly, we tested the hypothesis that biologically active proteasome is present physiologically in the extracellular alveolar space of humans and digests albumin, one of the predominant intra-alveolar proteins.
| METHODS |
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Bronchoalveolar lavage (BAL) was performed during anesthesia preceding surgery [abdominal hernia repair (2), removal of cerebral tumor (4), thyroid resection (1), partial liver resection (1)] with a bronchoscope wedged in a right upper lobe segmental bronchus (2, 6). Recovered volume (81 ml ± 20, i.e., 5163% of instilled volume) was filtered through gauze (34) to remove any visible particulate material and centrifuged (500 g, 10 min, 5°C). The supernatant was immediately frozen using liquid nitrogen and stored at 80°C. Cell counts were made in the pellet by counting an aliquot in a Neubauer chamber (34). Cell viability was determined by the Trypan blue dye exclusion technique (1). For differentiation of cells, smears were air-dried and stained according to May-Grunwald-Giemsa (6). The remaining cell pellet was frozen in liquid nitrogen and stored at 80°C. After cell lysis, the pellet was ultracentrifugated (30,000 g, 30 min), and its upper portion was used for further analysis (cell pellet lysate).
Hydrolyzing activities. Hydrolysis of proteasome-specific substrates was assayed with the fluorogenic substrates Suc-LLVY-AMC, BZ-VGR-AMC, and Suc-LLE-AMC (17).
Suc-LLVY-AMC (3-carboxy-propiony-Leu-Leu-Val-Tyr-7-amido-4-methylcumarin) is a fluorogenic substrate for the chymotrypsin-like activity of the proteasome (17).
BZ-VGR-AMC (benzoyl-Val-Gly-Arg-7-amido-4-methylcumarin) (5) is a substrate for the trypsin-like activity of the 20S proteasome. Suc-LLE-AMC (3-carboxy-propionyl-Leu-Leu-Glu-7-amido-4-methylcumarin) (48) is a fluorogenic substrate for the caspase-like (peptidylglutamyl-peptide hydrolyzing) activity of the proteasome.
The final concentration in the assay buffer system was: 100 µM fluorogenic substrate, 50 mM Tris·HCl, pH 8.0, 1 mM dithioerythritol (DTE), and 5 mM MgCl2. After incubation at 37°C for 60 min in a water bath, the reaction was inhibited irreversibly at specified time intervals by ethanol (20 min, 0°C). Release of 7-amido-4-methylcoumarin (AMC) was detected by spectrophotometry (RF-10A Xl, Shimadzu, Duisburg, Germany) with an excitation (
ex) of 380 nm and an emission (
em) of 460 nm. The final protein concentration for the cell pellet assay was 2 mg/ml. Since protein concentration in the BAL supernatant was so low that a final protein concentration of 2 mg/ml could not be achieved, 104 µl of BAL supernatant were taken into each assay for all subjects. All samples from all subjects were measured separately in duplicate. Duplicate measurements were averaged for each single subject, and these eight values were used for statistical analysis.
Inhibition of proteasome activity. To assess potential inhibition of hydrolysis, 10 µM epoxomicin (43) (Calbiochem, San Diego, CA) was added to the incubation mixture in separate assays to samples from all eight subjects. For determination of EC50 for epoxomicin inhibition of hydrolyzing activity in BAL supernatant, increasing concentrations of epoxomicin from 0.0001 to 15 µM were used. Epoxomicin is a novel, highly specific epoxy-ketone tetrapeptide proteasome inhibitor. It is cell permeable, potent, selective, and irreversible (43). It is the most potent and selective proteasome inhibitor currently available. Epoxomicin covalently binds to the LMP7, X, MECL1, and Z catalytic subunits of the proteasome. It inhibits all three enzyme activities of the proteasome (43).
In addition, we also studied (n = 8) the effects of other specific inhibitors (Calbiochem) of proteasomal activity such as proteasome inhibitor II (49) (concentrations of 0.00170 µM), MG-132 (39) (concentrations of 0.0170 µM), and thyropeptin A (45) (concentrations of 0.01100 µM). Proteasome inhibitor II (48) is a substrate-related inhibitor (Z-LLF-CHO) and inhibits the chymotryptic-like and tryptic-like activity. The inhibitor is cell permeable. Proteasome inhibitor IV (63) also mediates substrate-related inhibition and is a weak inhibitor of the chymotryptic-like activity. It also inhibits the caspase-like activity and weakly inhibits the tryptic-like activity. MG-132 (39) is a potent and selective reversible proteasome inhibitor mediating substrate-related inhibition (Z-Leu-Leu-Leu-CHO). It inhibits the chymotryptic-like activity and the tryptic-like activity. The caspase-like activity is not inhibited by MG-132. It also inhibits cathepsins and calpains (cysteine proteases). Thyropeptin A (45) is cell permeable and mediates competitive and reversible inhibition. It inhibits the chymotryptic-like and the tryptic-like activity of the proteasome.
To exclude effects on enzyme activity by lysosomal enzymes, we also studied the effect of the lysosomal inhibitor E64 (500 µM). E64 [trans-epoxysuccinyl-L-leucylamido-(4-guanidino)butane] (28) is an potent, irreversible, cell-permeable, and highly selective cysteine protease inhibitor, and E64 does not inhibit serine proteases (except trypsin) like the cysteine protease inhibitors, leupeptin, and antipain. The trans-epoxysuccinyl group (active moiety) of E64 irreversibly binds to an active thiol group of many cysteine proteases such as papain, actinidase, and cathepsins B, H, and L (58) to form a thioether linkage. The mechanism of inhibition of some cysteine proteases including cathepsins B and L, and of trypsin, have been reported (58).
We used fluorogenic substrate cleavage related to total protein [picokatal (pkat)/mg] to describe the specific enzyme activity of extracellular proteasome. We also calculated the volume-related enzyme activity of the BAL (pkat/ml) to derive total enzyme activity of the BAL recovery expressed as pkat (pkatBAL = pkat/ml x ml BAL recovery). Thus volume-related activity is expressed as U/ml (= katal/ml), and specific activity is expressed as U/mg (= katal/mg = mol/mol x s).
125I-labeling of BSA. Twenty-five micrograms of BSA were iodinated (62), mixed with 2.5 mg BSA, acetylated (67), and dialyzed against 20 mM Tris·HCl, pH 7.8. It was then precipitated by 5% wt/vol TCA. The pellet was resuspended in 300 µl of 1.0 M NaOH, diluted to a total volume of 6 ml in millipore water, heated to 60°C for 15 min, and stored at 80°C (125I-BSA stock solution). Methylated 125I-BSA was prepared according to Hershko et al. (29).
Proteolysis of 125I-BSA.
ATP-dependent proteolysis was measured as previously described (14, 67), and the assay was modified (25) for the measurements in BAL supernatant from eight individuals in separate assays. Proteolysis was measured in the presence and absence of 10 mM EDTA and 10 µM epoxomicin, respectively. Incubation mixture 1 (total vol 0.1 ml) for ATP/Mg2+-dependent activity (+ATP) had the following final concentrations: 10 µg/ml pure 125I-BSA and 50 µl sample of BAL supernatant, 50 mM Tris·HCl, pH 8.0, 1 mM DTE, 5 mM ATP, and 5 mM Mg2+. Mixtures with buffer instead of sample were incubated as controls. For measurement of ATP/Mg2+-independent proteolytic activity (mixture 2), 10 mM EDTA (ATP) was added to mixture 1. For the incubation mixture +ATP/+ubiquitin (final concentration: 0.1 mg/ml ubiquitin), ubiquitin was added to mixture 1. For the incubation mixture ATP/+epoxomicin (proteasome-independent activity), 10 µM (final concentration) epoxomicin (mixture 3) was added to mixture 2. After incubation at 37°C for 120 min, 0.125 ml 10% wt/vol TCA and 0.025 ml unlabeled BSA (30 mg/ml) were added to the mixtures and placed on ice (0°C) for 20 min. After centrifugation (Eppendorf 5415; Eppendorf, Hamburg, Germany) for 2 min at 14,000 g, the TCA-soluble radioactivity in the supernatant was measured in a gamma counter (Gammaszint BF 5300; Berthold, Cologne, Germany). Activity was expressed as U/ml as follows
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SDS-PAGE. SDS-PAGE was performed with Mini-Protean 3 Electrophoresis (Bio-Rad) with 15% gels according to Laemmli (38). Fifty micrograms of protein per lane were applied. The molecular weight standard was SeeBlue Pre-Stained Standard obtained from Invitrogen.
Western blots.
To detect the presence of proteasomal proteins, samples (50 µg/lane) were subjected to SDS-PAGE and transferred to PVDF (Bio-Rad) under semidry conditions with the use of a Trans-Blot Semi-Dry Electrophoretic Transfer Cell (Bio-Rad). After blocking the PVDF membranes by incubation with TBS-Tween buffer (5% Tween 20, 150 mM NaCl, 20 mM Tris·HCl, pH 7.6) and StartingBlock blocking buffer (Pierce) for 24 h at 4°C, the membranes were incubated (dilution 1:1,000, 2 h, room temperature) with rabbit polyclonal antibody to 20S proteasome
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-subunits (Biomol International; PW 8155). After being washed with TBS-Tween buffer (5% Tween 20, 150 mM NaCl, 20 mM Tris·HCl, pH 7.6), the membranes were incubated (1:10,000, 1 h, room temperature) with peroxidase-conjugated, affinity-isolated goat anti-rabbit IgG (Sigma Aldrich). After washing, the chemiluminescence method was employed to detect the peroxidase activity using an ECL kit (SuperSignal West Pico Chemiluminescence Substrate, Pierce).
Gelfiltration. Gelfiltrations (6 separate runs from 6 individuals) were performed on a Superose 6PG column (internal diameter: 1 cm, length: 40-cm packed gel, Amersham Bioscience) in 20 mM Tris·HCl, 10% glycerol, 100 mM NaCl, pH 7.5 (54), at 5°C. The column had been previously calibrated using proteins of known molecular mass: thyreoglobulin (668 kDa), ferritin (446 kDa), catalase (232 kDa), aldolase (158 kDa), IgG (160 kDa), BSA (67 kDa), ovalbumin (45 kDa), trypsin inhibitor (20.1 kDa), and cytochrome c (12.4 kDa). Molecular masses of the enzyme fractions were calculated by nonlinear regression based on the respective calibration function.
Lactate dehydrogenase activity. As a marker of possible cell damage, BAL supernatants were analyzed for total (LDH1-LDH5) lactate dehydrogenase (LDH) activity by a kinetic UV test (Diaglobal) using an optimized standard method (IFCC).
Albumin and total protein concentration. Albumin concentration in BAL supernatant in eight subjects was measured using an ELISA (Dade Behring, Marburg, Germany). Total protein in the BAL supernatant was determined after TCA precipitation (5%), washing, and resolubilization according to Lowry et al. (41) using an AutoAnalyzer (Technicon) employing BSA as a standard. Since albumin is the predominant protein (18) in the BAL, measured albumin concentrations were subtracted from the total protein. Hence, all data on hydrolyzing activity were referenced to albumin-depleted total protein.
ESI-QqTOF-mass spectrometry.
To analyze proteins in the peak Suc-LLVY-AMC eluate activity of the BAL supernatant (fractions 2226) (as described above) and the cell pellet lysate (fractions 2124) gel spots in a molecular range (above 20 kDa) likely to contain proteasomal proteins, if present, were excised from the SDS-PAGE of one individual and subjected to electrospray ionization mass spectrometry measurements (44). This technique provides a plot of detector signal intensity (abundance of ions) vs. the mass-to-charge ratio (of ions produced in the instrument; m/z). Such a plot is called a mass spectrum and is considered a "fingerprint" of a molecule, which may be identified by a positive comparison with a mass spectrum obtained from a known sample. Specifically, a sample is introduced into the gas phase and exposed to an ion source. Here, the substance (MH) is bombarded with electrons. Electrons interact in such a way as to produce positive ions of the substance, according to the equation MH + e
MH+ 2e. The MH+ ion has essentially the same mass as the original substance, so it is called a molecular ion. Enough energy is imparted to the substance during ionization that most molecules fragment, producing fragment ions with a smaller mass-to-charge ratio. The mass of the fragment ions and the abundance of ions at each mass varies widely among molecules and thus are unique for a particular molecule. Some molecules break apart so readily that no molecular ion remains. The fingerprint of the cracked molecules allows identification of (all) proteins present in the gel as long as they are listed in the database.
Chemicals. All chemicals were of highest available or analytical grade. Water was deionized, distilled, and passed through a Milli-Q-System (Millipore) before use.
Statistical analysis.
Data are described as medians (box and whisker plots) or means ± SD. Values of variables were compared using a Wilcoxon or paired sample t-test, as appropriate, using SPSS 11.0 (Chicago, IL). Differences were regarded as statistically significant with an
-error (P) of less than 0.05.
| RESULTS |
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-proteasomal subunits showed typical proteasomal protein bands in the 20- to 30-kDa range in all eight subjects (Fig. 4, A and B). Of note, the Western blots showed a different arrangement of proteasomal protein bands in BAL supernatant and cell pellet.
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3 (PSMA3), proteasome subunit
4 (PSAM4), and proteasome subunit
6 (PSMA6) (Table 1). Of note, peptides derived from 19S proteasomal caps (PSD3, PSD4, PSD11, PSD13) were exclusively found in the cell pellet lysate but not in the BAL supernatant. In addition, we found in BAL supernatant heat shock protein 90 (HSP 90), HSP70, and chaperonin containing TCP-1. Two of the protein spots could not be specified because signals could not be related to known proteins in the data base.
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| DISCUSSION |
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This questions several fundamental aspects of currently favored models of physiological proteasome localization and function. First, our data demonstrate for the first time that 20S proteasome is not only present extracellularly in the lung but also that it is enzymatically intact and active in the human alveolar space. Second, the 20S proteasome found degrades albumin, physiologically present in the alveolar space, with a high cleavage rate. Although the proteasome is known to degrade albumin, a feature used to describe tissue-related proteasomal activity (32), the idea that albumin is a physiological substrate of the proteasome in the extracellular alveolar space has not been addressed.
A 26S proteasome-mediated degradation of albumin in the BAL supernatant can be excluded because of the strict ATP and ubiquitin independency found. In fact, only the 19S caps of the 26S proteasome require ATP and ubiquitin for protein degradation (13, 32). Remarkably, the albumin cleavage rate in BAL supernatant found in vitro by the extracellular proteasome is greater than albumin degradation formerly assumed to occur in the alveolar space (7, 2224, 26, 42). Possibly, differences in radiolabeling techniques of albumin account for this difference. We used, for stable proteolysis, a chloramin T technique (62) with subsequent acetylation (67) and methylation of albumin (29) to allow more reliable and more stable measurements of proteasomal albumin degradation (29). In any case, 125I-albumin degradation by other catalytic enzymes of the extracellular alveolar space can be excluded because epoxomicin, a highly specific proteasome inhibitor, significantly inhibited albumin degradation in BAL supernatant.
Extracellular proteasome in the alveolar space by degrading albumin might be involved in the maintenance of a low intra-alveolar oncotic pressure. In fact, due to the high proteasome-dependent albumin cleavage rate observed, alveolar albumin load could increase 2.45-fold before degradation capacity would be exhausted. Considering that a BAL sample represents only
1.53% of the alveolar space (27) and that recovery of BAL fluid from the lung averaged 81 ml, albumin degradation capacity measured in BAL supernatant is substantial quantitatively. Of note, BAL of a lung segment is believed to represent
1 ml of epithelial lining fluid (64). Thus proteasome activity in the alveolar epithelial lining fluid in vivo might be many times greater than that measured in the BAL supernatant in our subjects.
Since alveolar albumin concentration can increase in lung diseases (47), it would be of interest to assess alveolar proteasomal albumin degradation in lung disease. Inflammatory acute and chronic lung disease where alveolar protein concentrations can increase dramatically would be of particular interest. Furthermore, since the alveolar space is an external surface, second only to the gastrointestinal tract in dealing with environmental antigens, it is conceivable that extracellular proteasome in the lung, besides albumin, degrades other alveolar proteins as well. In this respect, HSPs (11) and chaperonins (51, 52) also found in the alveolar space may assist the 20S proteasome in unfolding and digesting target proteins in the absence of 19S caps and the intracellular ubiquitin system.
A biologically active proteasome has not been demonstrated previously in the extracellular space of human lungs. Cell lysis as a major source of extracellular proteasome can be ruled out since neither BAL nor centrifugation resulted in cell damage or significant cell lysis. Furthermore, total extracellular proteasomal activity in the BAL supernatant was much higher than total activity in BAL cell pellet lysate itself. If proteasomal activity in BAL supernatant had been the result of cell lysis, total activity would not be higher in the supernatant than in the cell pellet. Finally, if the proteasome in BAL supernatant would have resulted only from cell lysis, the pattern of enzymatic activity in BAL supernatant and cell pellet should have been identical. In contrast, we observed that Suc-LLVY-AMC was the major activity in BAL supernatant, whereas BZ-VGR-AMC was the major activity in the cell pellet. Furthermore, Western blots showed that the pattern of proteasomal proteins, as labeled by the antibody against core proteins, was different in BAL supernatant and cell pellet lysate. In addition, we did not find contamination of BAL fluid by airway epithelial cells, but mainly alveolar macrophages and white cells, ruling out major contamination of BAL from airways. Together, these findings are inconsistent with extracellular proteasomal activity simply resulting from cell lysis. Nevertheless, even if alveolar proteasomal activity in the BAL supernatant would have resulted in part from alveolar lining cell turnover and lysis, our data would indicate that this is associated with substantial albumin proteolysis.
We used for BAL in humans the gold standard technique clinically available for alveolar sampling. We did not use the technique described by Ware et al. (65), inserting blindly a catheter into the airways via an endotracheal tube, since this method yields only a small recovery in healthy subjects without pulmonary edema. Thus our sampling technique employed yields the most reliable alveolar sample possible in humans.
Traditionally, the proteasomal system is considered to have intracellular functions, and the extracellular role of proteasomes has not yet been explored in the human lung. However, there is increasing evidence that proteasomes can exert physiological roles in the extracellular space, too. Of interest, extracellular proteasomal activity has been suggested for ascidian fertilization and sperm penetration of the viteline coat (55). In addition, proteasome and proteasome subunits have been detected in sera of patients with autoimmune disease (21) and were described as "circulating proteasome" (19-21, 60). Furthermore, particles of proteasomal structure have been detected on the cell surface of lymphocytes (12), and Vaithilingam et al. (61) described an extracellular proteasome-like structure released from cultured C6 astrocytoma cells with a molecular mass of 1,000 kDa, able to degrade collagen IV,
-casein,
-insulin, and synthetic proteasomal peptide substrates. In support of our findings, this suggests that human cells may secrete biologically active proteasomal structures.
Proteins larger than the 20S proteasome, such as
2-macroglobuline (820 kDa) and immunoglobulin M (900 kDa), are found in the BAL, too (10, 18, 33). The dimension of the 20S proteasome is 15 x 12 nm (37). Williams (68) found vesicles in the alveolar epithelium with radii as large as 130 nm. Thus transport mechanisms of adequate size are present for expulsion of proteasome from the alveolar epithelium. Alternatively, alveolar macrophages could release proteasome core proteins, but this has not been assessed.
Furthermore, the potential cellular source of the extracellular proteasome is unknown. The fact that the majority of activity was found in BAL supernatant rather than BAL cell pellet does not imply that 20S proteasome is brought into the extracellular space exclusively by resident cells of the alveolar space. In fact, data from Zoeger et al. (69) show in the blood proteasomal molecules that do not derive from platelets, red blood cells, or other blood-borne cells, suggesting that endothelial cells or other organs may secrete proteasome. Thus, extracellular alveolar proteasome could also derive from the blood stream.
In our study, we exclusively found 20S proteasome in the extracellular alveolar space, but not 26S proteasome, as indicated by gelfiltration experiments and molecular weight determination, and the ATP/ubiquitin independence. The 20S proteasome is a smaller protein complex than the 26S proteasome. Possibly, it is easier for cells to transfer into the extracellular space a 660-kDa protein than a 1,000-kDa protein. Furthermore, intracellular protein degradation via the 26S proteasome system requires a very complex enzyme cascade (E1-E4) including ubiquitylation and deubiquitylation and the presence of 19S proteasomal caps. Teleologically, it is not plausible how the alveolar space would set up and maintain such a complex and regulated enzyme system outside the cell. Instead, HSPs (11) and chaperonins (51, 52) in the alveolar space may assist the 20S proteasome in unfolding and digesting target proteins in the absence of the (intracellular) 19S proteasome caps and the ubiquitin system. Finally, our data showed protein degradation via the 20S proteasome independent of ATP and ubiquitin, without the presence of 19S caps required. This is consistent with the general principle that extracellular enzymes have to function without ATP because of its absence extracellularly.
Our findings also show that there is more extracellular alveolar machinery for protein degradation than previously known. Because of its ubiquitin independence, the extracellular proteasome described in this study may adopt a clearance function for proteins independent of the complex regulation described for the intracellular proteasome.
Furthermore, since proteasomal degradation is known to result in oligopeptides (13), the extracellular alveolar proteasome might be involved in extracellular antigen processing before antigens are presented to immune cells. However, it cannot be excluded that the alveolar proteasome besides protein degradation has other functions unrelated to protein digestion. In this context, the concept of moonlighting proteins, i.e., proteins that have completely different functions depending on their presence in different intracellular and extracellular compartments, is an interesting approach (8, 9, 15, 30, 31, 35, 46, 57).
In summary, biologically active 20S proteasome is physiologically present and functional in the extracellular human alveolar space and can degrade albumin. Its multicatalytical character and substantial albumin cleavage rate suggest that it has a biological role in alveolar protein degradation.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
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